Variant report

Variant	rs10478136
Chromosome Location	chr5:113006960-113006961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10050538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052948	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478130	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355397	0.90[AMR][1000 genomes]
rs13361262	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17135769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58969684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781726	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781728	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714750	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113002000-113007400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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