Variant report

Variant	rs73781728
Chromosome Location	chr5:112933675-112933676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112672794..112674511-chr5:112933592..112935108,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10035858	0.82[AFR][1000 genomes]
rs10050538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052948	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478136	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949529	0.82[AFR][1000 genomes]
rs11956733	0.82[AFR][1000 genomes]
rs11958257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355397	0.90[AMR][1000 genomes]
rs13361262	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17135769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57601831	0.82[AFR][1000 genomes]
rs58969684	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860124	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884794	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9326896	0.88[AFR][1000 genomes]
rs9885504	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv520674	chr5:112911165-112942820	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	esv2752057	chr5:112916398-112945992	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1029507	chr5:112916398-112945992	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
2	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:112910600-112935200	Weak transcription	Spleen	Spleen
4	chr5:112910600-112935400	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:112910600-112936600	Weak transcription	Colonic Mucosa	Colon
6	chr5:112910600-112942000	Weak transcription	Brain Substantia Nigra	brain
7	chr5:112910800-112934600	Weak transcription	Gastric	stomach
8	chr5:112910800-112935000	Weak transcription	Pancreas	Pancrea
9	chr5:112910800-112935200	Weak transcription	Esophagus	oesophagus
10	chr5:112910800-112937400	Weak transcription	Fetal Intestine Small	intestine
11	chr5:112910800-112938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:112910800-112942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:112916800-112936000	Weak transcription	Fetal Heart	heart
14	chr5:112917200-112942000	Weak transcription	K562	blood
15	chr5:112917400-112937600	Weak transcription	HSMMtube	muscle
16	chr5:112918000-112939000	Weak transcription	NHEK	skin
17	chr5:112920400-112939000	Weak transcription	HMEC	breast
18	chr5:112920600-112934600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr5:112920600-112934800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:112920600-112936000	Weak transcription	Brain Anterior Caudate	brain
21	chr5:112920800-112934000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:112920800-112938600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:112920800-112942000	Weak transcription	Ovary	ovary
24	chr5:112926800-112933800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:112927000-112936600	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:112927200-112941800	Weak transcription	HUVEC	blood vessel
27	chr5:112927800-112934800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr5:112927800-112939200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:112928200-112934200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr5:112928200-112936600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:112928800-112937800	Weak transcription	Osteobl	bone
32	chr5:112929000-112934400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:112929200-112935000	Weak transcription	Fetal Intestine Large	intestine
34	chr5:112929200-112935400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:112929200-112941400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:112929600-112934400	Weak transcription	Fetal Thymus	thymus
37	chr5:112929800-112936000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr5:112929800-112942000	Weak transcription	NH-A	brain
39	chr5:112929800-112943800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:112930000-112933800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:112930000-112934000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr5:112930000-112937600	Weak transcription	Primary B cells from cord blood	blood
43	chr5:112930000-112941800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr5:112930000-112941800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr5:112930000-112942000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:112930000-112942200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr5:112930000-112943800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr5:112930000-112944000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:112930200-112934400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:112930200-112934600	Weak transcription	Adipose Nuclei	Adipose

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