Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10035858	1.00[YRI][hapmap]
rs10050538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050553	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs10052948	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478130	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478136	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956733	1.00[YRI][hapmap]
rs11958257	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11960242	1.00[YRI][hapmap]
rs12110193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355397	0.90[AMR][1000 genomes]
rs17135769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58969684	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860124	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860151	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781726	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781728	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714750	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719254	1.00[YRI][hapmap]
rs7728682	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9326896	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv4961	chr5:112945908-112991152	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882725	chr5:112947050-112989901	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112948200-112952800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:112948800-112952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:112950000-112951600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:112950800-112951800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:112950800-112952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:112951000-112952000	Enhancers	Ovary	ovary

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