Variant report

Variant	rs10482628
Chromosome Location	chr5:142766656-142766657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:142755516..142757732-chr5:142765835..142767603,2	K562	blood:
2	chr5:142755476..142757016-chr5:142765835..142768238,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10482626	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10482659	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10482683	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61751250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61752273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023976	chr5:142692062-142813664	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142741600-142771600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:142757600-142768400	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:142761200-142767200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:142761200-142778600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:142761400-142769600	ZNF genes & repeats	GM12878-XiMat	blood
6	chr5:142761800-142766800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:142762200-142767400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:142762400-142767800	ZNF genes & repeats	A549	lung
9	chr5:142763600-142766800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
10	chr5:142764400-142768200	ZNF genes & repeats	Dnd41	blood
11	chr5:142764400-142778200	Weak transcription	Ovary	ovary
12	chr5:142764600-142775200	Weak transcription	HSMMtube	muscle
13	chr5:142764800-142768000	Weak transcription	Psoas Muscle	Psoas
14	chr5:142764800-142768600	Weak transcription	Spleen	Spleen
15	chr5:142764800-142776400	Weak transcription	Aorta	Aorta
16	chr5:142764800-142777200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:142764800-142779800	Weak transcription	Esophagus	oesophagus
18	chr5:142765000-142768600	Weak transcription	Gastric	stomach
19	chr5:142765000-142774000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:142765200-142768200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:142765400-142767000	Weak transcription	Brain Angular Gyrus	brain
22	chr5:142765400-142767200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr5:142765400-142778000	Weak transcription	Fetal Stomach	stomach
24	chr5:142765600-142767000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr5:142765600-142767600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:142765600-142768000	Weak transcription	Brain Substantia Nigra	brain
27	chr5:142765600-142768200	Weak transcription	Adipose Nuclei	Adipose
28	chr5:142765600-142778200	Weak transcription	Fetal Thymus	thymus
29	chr5:142765800-142767000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr5:142765800-142767200	Enhancers	NH-A	brain
31	chr5:142765800-142767800	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:142765800-142768000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:142765800-142768000	Weak transcription	NHLF	lung
34	chr5:142765800-142768200	Weak transcription	Brain Anterior Caudate	brain
35	chr5:142765800-142768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:142765800-142768600	Weak transcription	Fetal Lung	lung
37	chr5:142765800-142768600	Weak transcription	Left Ventricle	heart
38	chr5:142765800-142769400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr5:142765800-142769600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:142765800-142770400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:142765800-142772600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr5:142765800-142774800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr5:142765800-142775200	Weak transcription	Thymus	Thymus
44	chr5:142765800-142776400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:142765800-142778400	Weak transcription	Placenta	Placenta
46	chr5:142766000-142766800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:142766000-142766800	Enhancers	HSMM	muscle
48	chr5:142766000-142767200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr5:142766000-142767400	Enhancers	HMEC	breast
50	chr5:142766000-142778200	Weak transcription	Fetal Muscle Trunk	muscle

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