Variant report

Variant	rs61752273
Chromosome Location	chr5:142736010-142736011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10482626	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10482628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10482659	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10482683	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61751250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023976	chr5:142692062-142813664	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1033408	chr5:142701353-142738882	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv327858	chr5:142735069-142739490	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142693800-142747400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:142724400-142738000	Enhancers	Liver	Liver
3	chr5:142725000-142764200	Weak transcription	Lung	lung
4	chr5:142725200-142737000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:142725400-142737200	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:142727000-142737800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:142727600-142740200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:142728800-142736200	Enhancers	Brain Substantia Nigra	brain
9	chr5:142731800-142736400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:142732000-142737200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:142732400-142736200	Enhancers	Small Intestine	intestine
12	chr5:142732400-142737200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:142732400-142737600	Enhancers	NHLF	lung
14	chr5:142732600-142737200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr5:142732600-142737400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr5:142732800-142738000	Enhancers	Fetal Lung	lung
17	chr5:142733200-142736600	Enhancers	Fetal Heart	heart
18	chr5:142733400-142736200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:142733400-142736200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:142733400-142736200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr5:142733400-142736200	Enhancers	Fetal Muscle Leg	muscle
22	chr5:142733400-142736800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:142733600-142736800	Enhancers	Hela-S3	cervix
24	chr5:142733800-142736800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr5:142733800-142742000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr5:142734000-142736200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:142734000-142736400	Enhancers	Primary T cells from cord blood	blood
28	chr5:142734000-142736400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr5:142734000-142736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:142734000-142736800	Enhancers	Adipose Nuclei	Adipose
31	chr5:142734000-142737200	Enhancers	Dnd41	blood
32	chr5:142734000-142737400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:142734000-142737400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr5:142734000-142737800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:142734000-142737800	Enhancers	Brain Anterior Caudate	brain
36	chr5:142734000-142738800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:142734000-142743000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr5:142734000-142756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr5:142734200-142736200	Enhancers	Ovary	ovary
40	chr5:142734200-142736600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:142734200-142736800	Enhancers	Duodenum Mucosa	Duodenum
42	chr5:142734200-142737800	Enhancers	GM12878-XiMat	blood
43	chr5:142734200-142739400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr5:142734200-142740400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:142734200-142742200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:142734200-142743600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr5:142734200-142743600	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr5:142734200-142754200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr5:142734400-142736600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr5:142734400-142739000	Weak transcription	Thymus	Thymus

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