Variant report

Variant	rs10483158
Chromosome Location	chr22:30575163-30575164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30574627..30577107-chr22:30609828..30612772,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11090597	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11090600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11090601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11704206	0.80[AMR][1000 genomes]
rs11705048	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11705418	0.81[EUR][1000 genomes]
rs12165769	0.86[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[TSI][hapmap]
rs12166998	0.87[AMR][1000 genomes]
rs12169403	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs12169823	1.00[CEU][hapmap]
rs12330007	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12627944	0.90[AMR][1000 genomes]
rs17647135	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3788425	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[TSI][hapmap]
rs739615	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs916782	0.85[CEU][hapmap];0.90[AMR][1000 genomes]
rs9620935	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9620944	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9620948	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9620955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9625910	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9625914	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9625922	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9625924	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9625930	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv527188	chr22:30529741-30581722	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv524628	chr22:30575163-30581722	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30572000-30575400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:30572000-30577400	Weak transcription	Fetal Intestine Small	intestine
3	chr22:30572200-30575600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr22:30572200-30576200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr22:30572800-30578000	Weak transcription	Spleen	Spleen
6	chr22:30572800-30579000	Weak transcription	Fetal Brain Male	brain
7	chr22:30573200-30575400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr22:30573200-30576400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr22:30573400-30575400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr22:30573400-30575600	Enhancers	Primary T cells from cord blood	blood
11	chr22:30573400-30575600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr22:30573400-30575600	Enhancers	Thymus	Thymus
13	chr22:30573400-30575800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr22:30573600-30576400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr22:30573600-30579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr22:30573800-30575200	Enhancers	Fetal Thymus	thymus
17	chr22:30573800-30575600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr22:30574000-30575800	Enhancers	Dnd41	blood
19	chr22:30574200-30575600	Enhancers	A549	lung
20	chr22:30574400-30575200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr22:30574400-30575400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr22:30574400-30583600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr22:30574800-30579400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr22:30575000-30575400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr22:30575000-30579800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr22:30575000-30583600	Weak transcription	Primary T cells fromperipheralblood	blood

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