Variant report
Variant | rs9625922 |
---|---|
Chromosome Location | chr22:30519980-30519981 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:62978999..62979695-chr22:30519406..30520379,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10222281 | 0.82[AMR][1000 genomes] |
rs10483158 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11090591 | 0.82[AMR][1000 genomes] |
rs11090592 | 0.83[ASN][1000 genomes] |
rs11090597 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11090600 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11090601 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11704206 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11704885 | 0.82[AMR][1000 genomes] |
rs11705048 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11705207 | 0.82[AMR][1000 genomes] |
rs11705418 | 0.89[EUR][1000 genomes] |
rs12166998 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12169823 | 0.85[AMR][1000 genomes] |
rs12330007 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12627944 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs17647135 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs34647160 | 0.82[AMR][1000 genomes] |
rs5997567 | 1.00[ASN][1000 genomes] |
rs737905 | 0.82[AMR][1000 genomes] |
rs739615 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs916782 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9620936 | 0.85[AMR][1000 genomes] |
rs9620944 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9620948 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9620955 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs9625894 | 0.82[AMR][1000 genomes] |
rs9625895 | 0.82[AMR][1000 genomes] |
rs9625896 | 0.82[AMR][1000 genomes] |
rs9625899 | 0.85[AMR][1000 genomes] |
rs9625910 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9625914 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9625924 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9625930 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1064081 | chr22:29826745-30623965 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
2 | nsv544677 | chr22:29826745-30623965 | Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
3 | nsv588884 | chr22:30494371-30590026 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv834173 | chr22:30515092-30658277 | Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:30519200-30525400 | Weak transcription | A549 | lung |
2 | chr22:30519600-30523800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |