Variant report

Variant	rs34647160
Chromosome Location	chr22:30354410-30354411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30348834..30351665-chr22:30352625..30356782,4	K562	blood:
2	chr22:30354232..30357040-chr22:30359607..30363424,3	MCF-7	breast:
3	chr22:30353695..30355711-chr22:30356514..30358241,2	MCF-7	breast:
4	chr22:30353123..30354651-chr22:30355754..30358455,2	MCF-7	breast:
5	chr22:30346859..30350735-chr22:30351458..30355335,4	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10222281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483156	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11090591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11090592	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11090597	0.87[AMR][1000 genomes]
rs11704206	0.91[ASN][1000 genomes]
rs11704885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705048	0.84[AMR][1000 genomes]
rs11705207	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705418	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12165769	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12166087	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12166755	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12166998	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12169823	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12330007	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12330076	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12627856	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12627944	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12628395	0.83[ASN][1000 genomes]
rs17644868	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17644886	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17647135	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17713646	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520101	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28635872	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3747148	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3788418	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3788425	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737906	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737907	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739615	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs916782	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9620928	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9620929	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9620935	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620936	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9620944	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9620948	0.87[AMR][1000 genomes]
rs9625883	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9625886	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9625887	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9625889	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9625894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625899	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9625910	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9625914	0.87[AMR][1000 genomes]
rs9625922	0.82[AMR][1000 genomes]
rs9625930	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1064489	chr22:30316627-30361881	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv869764	chr22:30323649-30367813	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv523696	chr22:30326102-30381789	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1058511	chr22:30330447-30361881	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2763694	chr22:30330459-30361881	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv588883	chr22:30333405-30365842	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv3591	chr22:30344208-30388897	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30334200-30374800	Weak transcription	Thymus	Thymus
2	chr22:30340200-30355400	Weak transcription	Fetal Intestine Small	intestine
3	chr22:30340200-30374800	Weak transcription	Fetal Thymus	thymus
4	chr22:30340600-30360400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr22:30340600-30370000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr22:30340600-30375000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr22:30340800-30376000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr22:30341400-30355200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr22:30342600-30375200	Weak transcription	Spleen	Spleen
10	chr22:30344200-30375000	Weak transcription	HMEC	breast
11	chr22:30344400-30376000	Weak transcription	HSMMtube	muscle
12	chr22:30344600-30357600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:30344600-30357800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr22:30344600-30358400	Weak transcription	Fetal Stomach	stomach
15	chr22:30344600-30367200	Weak transcription	Brain Anterior Caudate	brain
16	chr22:30344600-30370000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr22:30344600-30374600	Weak transcription	Adipose Nuclei	Adipose
18	chr22:30344600-30375600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr22:30345000-30358600	Weak transcription	Fetal Lung	lung
20	chr22:30345000-30367200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr22:30345000-30367600	Weak transcription	Brain Germinal Matrix	brain
22	chr22:30345000-30375400	Weak transcription	Fetal Brain Female	brain
23	chr22:30345400-30356400	Weak transcription	Fetal Brain Male	brain
24	chr22:30345400-30370000	Weak transcription	HSMM	muscle
25	chr22:30345400-30371600	Weak transcription	Lung	lung
26	chr22:30345400-30379000	Weak transcription	Esophagus	oesophagus
27	chr22:30345800-30363200	Weak transcription	Liver	Liver
28	chr22:30346200-30355200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr22:30347000-30373800	Weak transcription	Left Ventricle	heart
30	chr22:30347200-30357800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr22:30347200-30369600	Weak transcription	Pancreas	Pancrea
32	chr22:30347600-30359600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr22:30347600-30360000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr22:30348000-30374800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr22:30348200-30357600	Weak transcription	Primary T cells from cord blood	blood
36	chr22:30348200-30363200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr22:30348400-30366200	Weak transcription	Colon Smooth Muscle	Colon
38	chr22:30348400-30373800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr22:30348400-30387200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr22:30348600-30358400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr22:30348600-30366600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr22:30348800-30367200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr22:30349400-30357400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr22:30349400-30366200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr22:30349400-30370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr22:30349600-30358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr22:30349600-30360000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr22:30349800-30367600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr22:30350000-30367800	Weak transcription	Brain Substantia Nigra	brain
50	chr22:30350400-30355600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links