Variant report

Variant	rs12166998
Chromosome Location	chr22:30456661-30456662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10222281	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10483158	0.87[AMR][1000 genomes]
rs11090591	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11090592	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11090597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11090600	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11090601	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11704206	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11704885	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11705048	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11705207	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11705418	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12165769	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12166755	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12169823	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12330007	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12330076	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12627856	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12627944	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644868	0.87[ASN][1000 genomes]
rs17644886	0.87[ASN][1000 genomes]
rs17647135	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17713646	0.95[ASN][1000 genomes]
rs28635872	0.81[AMR][1000 genomes]
rs34647160	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3788425	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs737905	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs737906	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs737907	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs739615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916782	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9620928	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9620929	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9620935	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9620936	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9620944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9620948	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9620955	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9625883	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9625886	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9625887	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9625889	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9625894	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9625895	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9625896	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9625899	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9625910	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9625914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9625922	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9625924	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9625930	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv829165	chr22:30450894-30459421	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv819812	chr22:30453933-30470372	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	nsv829166	chr22:30456513-30459105	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv829167	chr22:30456513-30459421	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv829168	chr22:30456513-30470312	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30456400-30457000	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr22:30456600-30456800	Enhancers	Fetal Intestine Small	intestine
3	chr22:30456600-30460000	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links