Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483530	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109441	0.80[EUR][1000 genomes]
rs17109456	0.80[EUR][1000 genomes]
rs17109513	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109516	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109519	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109535	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109545	0.87[EUR][1000 genomes]
rs17109602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109706	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3885125	0.80[EUR][1000 genomes]
rs4550350	0.80[EUR][1000 genomes]
rs57849404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679420	0.80[EUR][1000 genomes]
rs72679421	0.80[EUR][1000 genomes]
rs72679429	0.80[EUR][1000 genomes]
rs72679441	0.87[EUR][1000 genomes]
rs72679450	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832775	chr14:40038735-40193559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3430563	chr14:40124250-40140803	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1051931	chr14:40130325-40164269	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1046932	chr14:40132136-40268085	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40134200-40142000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:40134600-40141800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:40134800-40140600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:40135800-40143000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:40136800-40139000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:40137600-40138600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr14:40137600-40138800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:40137600-40139000	Enhancers	Primary T cells from cord blood	blood
9	chr14:40137600-40139000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:40137600-40139400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:40138000-40138800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr14:40138200-40141000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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