Variant report
| Variant | rs17109516 |
|---|---|
| Chromosome Location | chr14:40117049-40117050 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:40108419..40110081-chr14:40116251..40119239,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10483530 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10483532 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12431841 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12586381 | 0.81[EUR][1000 genomes] |
| rs12586515 | 0.81[EUR][1000 genomes] |
| rs17109441 | 0.93[EUR][1000 genomes] |
| rs17109456 | 0.93[EUR][1000 genomes] |
| rs17109505 | 0.88[EUR][1000 genomes] |
| rs17109513 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17109519 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17109535 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17109545 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17109602 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17109618 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17109625 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3885125 | 0.93[EUR][1000 genomes] |
| rs4550350 | 0.93[EUR][1000 genomes] |
| rs57849404 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72679412 | 0.81[EUR][1000 genomes] |
| rs72679413 | 0.81[EUR][1000 genomes] |
| rs72679420 | 0.93[EUR][1000 genomes] |
| rs72679421 | 0.93[EUR][1000 genomes] |
| rs72679424 | 0.81[EUR][1000 genomes] |
| rs72679429 | 0.93[EUR][1000 genomes] |
| rs72679441 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72679450 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3523177 | chr14:39875036-40128325 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv3523178 | chr14:39875036-40128325 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 3 | nsv915558 | chr14:39944831-40165370 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv832775 | chr14:40038735-40193559 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:40116800-40117400 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr14:40117000-40117600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
