Variant report

Variant	rs3885125
Chromosome Location	chr14:40074636-40074637
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10483530	0.80[EUR][1000 genomes]
rs10483532	0.80[EUR][1000 genomes]
rs12431841	0.80[EUR][1000 genomes]
rs12586381	0.87[EUR][1000 genomes]
rs12586515	0.87[EUR][1000 genomes]
rs17109441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109505	0.82[EUR][1000 genomes]
rs17109513	0.93[EUR][1000 genomes]
rs17109516	0.93[EUR][1000 genomes]
rs17109519	0.93[EUR][1000 genomes]
rs17109535	0.93[EUR][1000 genomes]
rs17109545	0.93[EUR][1000 genomes]
rs17109602	0.80[EUR][1000 genomes]
rs17109618	0.80[EUR][1000 genomes]
rs17109625	0.80[EUR][1000 genomes]
rs4550350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57849404	0.80[EUR][1000 genomes]
rs72679412	0.87[EUR][1000 genomes]
rs72679413	0.87[EUR][1000 genomes]
rs72679420	1.00[EUR][1000 genomes]
rs72679421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679424	0.87[EUR][1000 genomes]
rs72679429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679441	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679450	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564419	chr14:40026898-40090236	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv901658	chr14:40026898-40096888	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv832775	chr14:40038735-40193559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1248	chr14:40038859-40083703	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40072400-40078200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr14:40072600-40076000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:40072600-40078200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:40073400-40076400	Enhancers	Primary T cells from cord blood	blood
5	chr14:40073600-40076000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr14:40074000-40075200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:40074000-40075800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr14:40074400-40074800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:40074400-40075200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:40074600-40074800	Enhancers	Primary T cells fromperipheralblood	blood

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