Variant report

Variant	rs10483842
Chromosome Location	chr14:72654211-72654212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17107761	1.00[CEU][hapmap]
rs17108326	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs17179637	0.81[GIH][hapmap];0.85[TSI][hapmap]
rs17179734	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs17179797	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17179811	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17768889	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2238258	1.00[CEU][hapmap]
rs6574048	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7148742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151047	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72652400-72655000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:72652400-72655000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:72652800-72654400	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr14:72652800-72655000	Enhancers	Fetal Lung	lung
5	chr14:72652800-72655200	Enhancers	Adipose Nuclei	Adipose
6	chr14:72652800-72655200	Enhancers	Aorta	Aorta
7	chr14:72653600-72654400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:72653600-72683000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:72653800-72654800	Weak transcription	Fetal Kidney	kidney
10	chr14:72653800-72655000	Weak transcription	Left Ventricle	heart
11	chr14:72653800-72655000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:72653800-72658800	Weak transcription	Right Atrium	heart
13	chr14:72654200-72654400	Enhancers	Spleen	Spleen
14	chr14:72654200-72663000	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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