Variant report

Variant	rs7148742
Chromosome Location	chr14:72653077-72653078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10483842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107761	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17107779	0.81[EUR][1000 genomes]
rs17108326	0.85[CHB][hapmap]
rs17179734	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17179797	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17179811	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17768889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs2238258	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs60637119	0.81[EUR][1000 genomes]
rs61293752	0.81[EUR][1000 genomes]
rs6574048	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7151047	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs74060670	0.81[EUR][1000 genomes]
rs74060672	0.81[EUR][1000 genomes]
rs74060673	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72652400-72653200	Enhancers	Left Ventricle	heart
2	chr14:72652400-72653800	Enhancers	Right Atrium	heart
3	chr14:72652400-72654200	Enhancers	Fetal Stomach	stomach
4	chr14:72652400-72655000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:72652400-72655000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:72652800-72653200	Enhancers	Brain Substantia Nigra	brain
7	chr14:72652800-72653800	Enhancers	Colon Smooth Muscle	Colon
8	chr14:72652800-72653800	Enhancers	Fetal Heart	heart
9	chr14:72652800-72653800	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:72652800-72654000	Enhancers	Brain Anterior Caudate	brain
11	chr14:72652800-72654200	Enhancers	Brain Cingulate Gyrus	brain
12	chr14:72652800-72654200	Enhancers	Right Ventricle	heart
13	chr14:72652800-72654200	Enhancers	Stomach Smooth Muscle	stomach
14	chr14:72652800-72654400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr14:72652800-72655000	Enhancers	Fetal Lung	lung
16	chr14:72652800-72655200	Enhancers	Adipose Nuclei	Adipose
17	chr14:72652800-72655200	Enhancers	Aorta	Aorta
18	chr14:72653000-72653200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr14:72653000-72653600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:72653000-72653600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:72653000-72653600	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr14:72653000-72653800	Enhancers	Fetal Muscle Leg	muscle
23	chr14:72653000-72654200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:72653000-72654200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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