Variant report

Variant	rs17179797
Chromosome Location	chr14:72631856-72631857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10483842	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17107761	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17107779	0.81[EUR][1000 genomes]
rs17108326	1.00[CHB][hapmap]
rs17179734	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17179811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17768889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2238258	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs60637119	0.81[EUR][1000 genomes]
rs61293752	0.81[EUR][1000 genomes]
rs6574048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148742	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7151047	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs74060670	0.81[EUR][1000 genomes]
rs74060672	0.81[EUR][1000 genomes]
rs74060673	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv902076	chr14:72565656-72632217	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902077	chr14:72576679-72632217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv902079	chr14:72583802-72632217	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv902080	chr14:72587872-72632217	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72620400-72633400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72624200-72638600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72626200-72645800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:72630000-72632600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:72630600-72632200	Enhancers	GM12878-XiMat	blood
6	chr14:72630800-72632200	Enhancers	Primary hematopoietic stem cells	blood
7	chr14:72630800-72632200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:72630800-72632200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:72631000-72632200	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:72631200-72632400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr14:72631400-72632200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:72631400-72632400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr14:72631600-72632000	Enhancers	Primary B cells from cord blood	blood
14	chr14:72631600-72632200	Active TSS	Brain Angular Gyrus	brain
15	chr14:72631800-72632200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:72631800-72632200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:72631800-72632200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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