Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1337908	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1415802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569781	0.80[EUR][1000 genomes]
rs1569782	0.80[EUR][1000 genomes]
rs2295099	0.80[EUR][1000 genomes]
rs28657921	0.84[EUR][1000 genomes]
rs4815101	0.89[CEU][hapmap]
rs4815102	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6047982	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106481	0.85[EUR][1000 genomes]
rs6106493	0.80[EUR][1000 genomes]
rs6113592	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6113604	0.80[EUR][1000 genomes]
rs6113607	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6113610	0.80[EUR][1000 genomes]
rs62202800	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62202801	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62202802	0.80[EUR][1000 genomes]
rs62202815	0.80[EUR][1000 genomes]
rs804688	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv544212	chr20:22233715-22256861	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22242600-22251200	Weak transcription	Rectal Smooth Muscle	rectum

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