Variant report

Variant	rs4815102
Chromosome Location	chr20:22255173-22255174
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr20:22255105-22255261	HepG2	liver:	n/a	n/a
2	CEBPB	chr20:22255028-22255328	K562	blood:	n/a	n/a
3	CEBPB	chr20:22255019-22255293	MCF-7	breast:	n/a	n/a
4	MAX	chr20:22255056-22255254	NB4	blood:	n/a	chr20:22255130-22255137 chr20:22255128-22255138
5	CEBPB	chr20:22254965-22255438	A549	lung:	n/a	n/a
6	JUN	chr20:22255084-22255291	HepG2	liver:	n/a	chr20:22255172-22255185
7	CEBPB	chr20:22254983-22255252	HepG2	liver:	n/a	n/a
8	CEBPB	chr20:22254996-22255349	A549	lung:	n/a	n/a
9	CEBPB	chr20:22255003-22255283	A549	lung:	n/a	n/a
10	CEBPB	chr20:22254991-22255364	HepG2	liver:	n/a	n/a
11	CEBPB	chr20:22254994-22255345	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-8	chr20:22255046-22255184	XLOC_013679

Variant related genes	Relation type
ENSG00000225170	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1028444	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1035986	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035987	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485630	0.80[EUR][1000 genomes]
rs1337906	0.82[AFR][1000 genomes]
rs1337908	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1415802	0.80[EUR][1000 genomes]
rs1569781	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569782	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832371	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295099	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657921	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4813451	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813452	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59836638	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6047982	0.80[EUR][1000 genomes]
rs6106481	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6106493	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113608	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113610	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6113624	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62202800	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62202801	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62202802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62202815	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62202817	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62202846	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8114448	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980970	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv544212	chr20:22233715-22256861	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv962639	chr20:22254826-22283685	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22254800-22255200	Enhancers	HSMMtube	muscle

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