Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12625314	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12625315	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1337907	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1337908	0.82[EUR][1000 genomes]
rs1415801	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28657921	0.85[EUR][1000 genomes]
rs2876633	0.84[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes]
rs4815098	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815099	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4815101	0.80[AFR][1000 genomes]
rs4815102	0.82[AFR][1000 genomes]
rs6106481	0.82[EUR][1000 genomes]
rs6113583	0.93[EUR][1000 genomes]
rs6113585	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6113607	0.82[AFR][1000 genomes]
rs6137582	0.84[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes]
rs62202797	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62202800	0.83[EUR][1000 genomes]
rs62202801	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62202802	0.82[AFR][1000 genomes]
rs62202815	0.82[AFR][1000 genomes]
rs8114448	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065067	chr20:22199617-22240462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1337906	ABHD12	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22211600-22215400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr20:22214200-22215200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr20:22214400-22215200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr20:22214400-22215800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr20:22214800-22215200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:22214800-22216600	Weak transcription	Fetal Thymus	thymus
7	chr20:22214800-22217800	Enhancers	Dnd41	blood

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