Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22207148..22209709-chr20:22210226..22212970,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12625315	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337906	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1337907	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1337908	0.88[AFR][1000 genomes]
rs1415801	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569782	0.86[AFR][1000 genomes]
rs28657921	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2876633	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4813451	0.84[AFR][1000 genomes]
rs4813452	0.84[AFR][1000 genomes]
rs4815098	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4815099	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106481	0.90[AFR][1000 genomes]
rs6113583	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6113585	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6113624	0.84[AFR][1000 genomes]
rs6137582	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62202797	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62202800	0.92[AFR][1000 genomes]
rs804610	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065067	chr20:22199617-22240462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22209800-22213000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:22211600-22213400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:22211600-22215400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr20:22211800-22213800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr20:22211800-22214800	Enhancers	Fetal Thymus	thymus
6	chr20:22212000-22213600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr20:22212000-22213800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr20:22212200-22213600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr20:22212400-22214800	Flanking Active TSS	Dnd41	blood
10	chr20:22212600-22213600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr20:22212600-22213600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr20:22212600-22213600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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