Variant report

Variant	rs6113583
Chromosome Location	chr20:22195065-22195066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1090292	0.84[ASN][1000 genomes]
rs1090293	0.84[ASN][1000 genomes]
rs1159466	0.85[ASN][1000 genomes]
rs12625314	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12625315	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1337906	0.93[EUR][1000 genomes]
rs1337907	0.92[EUR][1000 genomes]
rs1415801	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2876633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4815098	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4815099	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6082642	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs6113585	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137582	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62202797	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs709005	0.85[ASN][1000 genomes]
rs709006	0.84[ASN][1000 genomes]
rs709007	0.84[ASN][1000 genomes]
rs742655	0.81[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs804609	0.85[ASN][1000 genomes]
rs804610	0.98[ASN][1000 genomes]
rs804612	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs804614	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs804615	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs804616	0.84[ASN][1000 genomes]
rs804617	0.84[ASN][1000 genomes]
rs804618	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22194200-22195400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:22194400-22195200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr20:22194400-22197600	Weak transcription	GM12878-XiMat	blood
4	chr20:22195000-22196800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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