Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr20:22196281-22196491	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000234862	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1090292	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1090293	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1159466	0.99[ASN][1000 genomes]
rs2876633	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4815098	0.83[ASN][1000 genomes]
rs6113583	0.85[ASN][1000 genomes]
rs6113585	0.83[ASN][1000 genomes]
rs6137582	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs709005	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs709006	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs709007	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742655	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804553	0.92[EUR][1000 genomes]
rs804609	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804610	0.86[ASN][1000 genomes]
rs804612	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs804614	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804615	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804616	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804617	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs804618	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22194400-22197600	Weak transcription	GM12878-XiMat	blood
2	chr20:22195000-22196800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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