Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1090292	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1090293	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1159466	0.98[ASN][1000 genomes]
rs2876633	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4815098	0.84[ASN][1000 genomes]
rs6082642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6113583	0.85[ASN][1000 genomes]
rs6113585	0.84[ASN][1000 genomes]
rs6137582	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs709005	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs709006	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs709007	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742655	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs804553	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs804610	0.87[ASN][1000 genomes]
rs804612	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804614	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs804615	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs804616	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs804617	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs804618	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22194200-22195400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:22194400-22195200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr20:22194400-22197600	Weak transcription	GM12878-XiMat	blood

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