Variant report

Variant	rs62202797
Chromosome Location	chr20:22213340-22213341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12625314	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12625315	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1337906	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337907	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1415801	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28657921	0.81[EUR][1000 genomes]
rs2876633	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4815098	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4815099	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6113583	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6113585	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6137582	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs804610	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065067	chr20:22199617-22240462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22211600-22213400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr20:22211600-22215400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr20:22211800-22213800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr20:22211800-22214800	Enhancers	Fetal Thymus	thymus
5	chr20:22212000-22213600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr20:22212000-22213800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr20:22212200-22213600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr20:22212400-22214800	Flanking Active TSS	Dnd41	blood
9	chr20:22212600-22213600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr20:22212600-22213600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr20:22212600-22213600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr20:22213000-22214000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:22213200-22214000	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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