Variant report

Variant	rs6106481
Chromosome Location	chr20:22223640-22223641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22218098..22219872-chr20:22223528..22225195,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1028444	0.86[CHB][hapmap];0.96[CHD][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10485630	0.85[EUR][1000 genomes]
rs12625314	0.90[AFR][1000 genomes]
rs1337906	0.82[EUR][1000 genomes]
rs1337907	0.81[EUR][1000 genomes]
rs1337908	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1415802	0.85[EUR][1000 genomes]
rs1569781	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1569782	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2295099	0.90[EUR][1000 genomes]
rs28657921	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876633	0.84[CEU][hapmap]
rs4813451	0.89[AFR][1000 genomes]
rs4813452	0.89[AFR][1000 genomes]
rs4815098	0.88[AFR][1000 genomes]
rs4815101	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4815102	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59836638	0.90[EUR][1000 genomes]
rs6047982	0.85[EUR][1000 genomes]
rs6106493	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6113585	0.90[AFR][1000 genomes]
rs6113592	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6113604	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6113607	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6113608	0.89[EUR][1000 genomes]
rs6113610	0.90[EUR][1000 genomes]
rs6113624	0.89[AFR][1000 genomes]
rs6137582	0.84[CEU][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];0.86[AFR][1000 genomes]
rs62202800	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62202801	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62202802	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62202815	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8114448	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065067	chr20:22199617-22240462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22223000-22224600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:22223400-22224400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links