Variant report

Variant	rs10485771
Chromosome Location	chr20:14051103-14051104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:14050662..14052329-chr20:14946506..14948938,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485770	0.81[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap]
rs11905094	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11906598	0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap]
rs11908401	0.80[MEX][hapmap]
rs11908650	0.95[JPT][hapmap];0.86[YRI][hapmap]
rs12481175	0.82[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs13433198	0.85[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.87[YRI][hapmap]
rs17263514	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1969777	0.80[MEX][hapmap]
rs2273401	0.82[JPT][hapmap]
rs2295413	0.85[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs2295414	0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap]
rs2995908	0.90[GIH][hapmap]
rs3848777	0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap]
rs3955223	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs4813149	0.90[JPT][hapmap];0.85[YRI][hapmap]
rs4813150	0.90[JPT][hapmap];0.87[YRI][hapmap]
rs4814276	0.90[JPT][hapmap];0.87[YRI][hapmap]
rs4814277	0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap]
rs4814278	0.97[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs6074695	0.90[GIH][hapmap]
rs6079241	0.90[JPT][hapmap]
rs6079316	0.90[GIH][hapmap]
rs6079319	0.90[GIH][hapmap]
rs6105190	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6105202	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6105211	0.85[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110105	0.90[JPT][hapmap]
rs6110126	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6110128	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6110130	0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110132	0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6110136	0.85[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110140	0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap]
rs6110149	0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110153	0.85[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110156	0.97[GIH][hapmap]
rs62209485	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8119793	0.88[GIH][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv526954	chr20:13995214-14055947	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14050000-14051200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr20:14050000-14051400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:14050000-14051600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr20:14050200-14051200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:14050200-14051200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr20:14050200-14051400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr20:14050200-14051600	Enhancers	HMEC	breast
8	chr20:14050400-14051200	Enhancers	NHDF-Ad	bronchial

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