Variant report

Variant	rs17263514
Chromosome Location	chr20:14046551-14046552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10485770	0.94[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs10485771	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11699840	0.82[ASN][1000 genomes]
rs11905094	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11906598	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs11908401	0.80[MEX][hapmap]
rs11908650	0.93[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs12479467	0.88[ASN][1000 genomes]
rs12480372	0.87[ASN][1000 genomes]
rs12481175	0.94[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs12481405	0.83[ASN][1000 genomes]
rs13433198	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.87[YRI][hapmap];0.89[ASN][1000 genomes]
rs1969777	0.80[MEX][hapmap]
rs2180404	0.88[ASN][1000 genomes]
rs2273401	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2295413	0.94[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs2295414	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs2876713	0.89[ASN][1000 genomes]
rs28794917	0.87[ASN][1000 genomes]
rs2995908	0.87[GIH][hapmap]
rs3848777	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs3955223	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs4477989	0.89[ASN][1000 genomes]
rs4813148	0.87[ASN][1000 genomes]
rs4813149	0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs4813150	0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs4814273	0.86[ASN][1000 genomes]
rs4814276	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs4814277	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap];0.89[ASN][1000 genomes]
rs4814278	0.95[GIH][hapmap];0.83[TSI][hapmap]
rs6074695	0.88[GIH][hapmap]
rs6079241	0.90[JPT][hapmap]
rs6079316	0.88[GIH][hapmap]
rs6079319	0.88[GIH][hapmap]
rs6105190	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6105202	0.93[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs6105206	0.88[ASN][1000 genomes]
rs6105211	0.94[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110105	0.90[JPT][hapmap]
rs6110126	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs6110127	0.86[ASN][1000 genomes]
rs6110128	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs6110130	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs6110132	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs6110136	0.94[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs6110137	0.88[ASN][1000 genomes]
rs6110140	0.87[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs6110142	0.84[ASN][1000 genomes]
rs6110149	0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs6110153	0.94[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.89[ASN][1000 genomes]
rs6110154	0.90[ASN][1000 genomes]
rs6110156	0.95[GIH][hapmap]
rs62209485	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73900793	0.88[ASN][1000 genomes]
rs8119793	0.85[GIH][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv526954	chr20:13995214-14055947	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14043400-14048400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr20:14044000-14048400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr20:14044200-14047800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:14045800-14046600	Enhancers	Pancreas	Pancrea
5	chr20:14046200-14046800	Enhancers	Liver	Liver
6	chr20:14046200-14047000	Enhancers	HepG2	liver
7	chr20:14046400-14050200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:14046400-14050200	Weak transcription	HMEC	breast

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