Variant report

Variant	rs10487162
Chromosome Location	chr7:103266449-103266450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103262129..103264756-chr7:103265630..103268934,3	K562	blood:
2	chr7:103265123..103267515-chr7:103269219..103272108,3	K562	blood:
3	chr7:103253050..103254714-chr7:103265200..103267338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1006817	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10238708	0.82[JPT][hapmap]
rs10264864	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10280665	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs10280766	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10281266	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs10435337	0.91[CEU][hapmap];0.95[JPT][hapmap]
rs1074301	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1074302	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535373	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs12539504	0.83[JPT][hapmap]
rs12540537	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs1355354	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs145527	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17153808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1912552	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2073555	0.96[ASN][1000 genomes]
rs2073558	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2106174	0.95[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2188181	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2191704	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2283024	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs2283027	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs2299340	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299360	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs2299372	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2299374	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs2299375	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs35323065	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362629	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362632	0.95[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362637	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs362639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs362664	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362705	0.91[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808020	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3819456	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs6950480	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6954563	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs6958081	0.82[JPT][hapmap]
rs6966096	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966411	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6969389	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6977616	0.87[JPT][hapmap]
rs727531	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7786713	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7787983	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7798414	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs7800136	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9690586	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975743	0.86[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3450159	chr7:103265759-103268345	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3476500	chr7:103265927-103268268	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3476499	chr7:103265997-103268186	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3476501	chr7:103265997-103268186	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103256200-103269000	Weak transcription	K562	blood
2	chr7:103260200-103267000	Weak transcription	HepG2	liver
3	chr7:103265600-103268400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:103266400-103266600	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links