Variant report

Variant	rs35323065
Chromosome Location	chr7:103272574-103272575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr7:103272544-103272989	K562	blood:	n/a	n/a
2	RCOR1	chr7:103272540-103272740	K562	blood:	n/a	n/a
3	CTCF	chr7:103272540-103272690	HPF	lung:	n/a	n/a
4	ARID3A	chr7:103272498-103272859	K562	blood:	n/a	n/a
5	CTCF	chr7:103272507-103272814	K562	blood:	n/a	n/a
6	JUND	chr7:103272527-103272811	K562	blood:	n/a	n/a
7	CUX1	chr7:103272572-103272667	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103270998..103273560-chr7:103345066..103347137,2	K562	blood:
2	chr17:62024047..62024737-chr7:103272103..103272828,2	MCF-7	breast:

Variant related genes	Relation type
RELN	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1006817	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10487162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1074301	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1074302	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs145527	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17153808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073555	0.96[ASN][1000 genomes]
rs2073558	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2106174	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2188181	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2191704	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299340	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362629	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362632	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362637	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs362639	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs362664	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs362705	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808020	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6950480	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966096	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6966411	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6969389	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs727531	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7786713	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7787983	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7800136	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9690586	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103268000-103272600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:103268400-103273600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:103271000-103272600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:103271200-103272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:103271200-103272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:103271200-103272600	Weak transcription	NH-A	brain
7	chr7:103271200-103275800	Weak transcription	HepG2	liver
8	chr7:103271200-103276800	Weak transcription	NHLF	lung
9	chr7:103271200-103277000	Weak transcription	NHDF-Ad	bronchial
10	chr7:103271400-103272600	Weak transcription	NHEK	skin
11	chr7:103271600-103272800	Weak transcription	HMEC	breast
12	chr7:103272400-103273000	Genic enhancers	K562	blood
13	chr7:103272400-103274800	Enhancers	Muscle Satellite Cultured Cells	--

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