Variant report

Variant	rs362632
Chromosome Location	chr7:103233589-103233590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103232129..103235431-chr7:103236152..103239545,4	K562	blood:
2	chr7:103218935..103220580-chr7:103231967..103234763,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1006817	0.87[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10238708	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs10264864	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs10280665	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs10280766	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs10281266	0.95[CEU][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap]
rs10435337	0.95[CEU][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap]
rs10487162	0.95[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1074301	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1074302	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12535373	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs12539504	0.82[JPT][hapmap]
rs12540537	0.91[CEU][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs1355354	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs145527	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17153808	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1912552	0.90[CEU][hapmap]
rs2073555	0.89[ASN][1000 genomes]
rs2073558	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2106174	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2188181	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2191704	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2283024	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2283027	0.85[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs2283028	0.81[CEU][hapmap];0.85[MEX][hapmap]
rs2299340	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299360	0.95[CEU][hapmap];0.90[JPT][hapmap]
rs2299372	0.91[CEU][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap]
rs2299374	0.91[CEU][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap]
rs2299375	0.91[CEU][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap]
rs35323065	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36056948	0.81[EUR][1000 genomes]
rs362629	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs362637	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs362639	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs362664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362705	0.95[CEU][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808020	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3819456	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs6950480	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6954563	0.89[CEU][hapmap]
rs6958081	0.82[JPT][hapmap]
rs6966096	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6966411	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6969389	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6977616	0.86[JPT][hapmap]
rs727531	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7786713	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7787983	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7798414	0.91[CEU][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap]
rs7800136	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9690586	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs975743	0.91[CEU][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs362632	GNB2	cis	parietal	SCAN
rs362632	UFSP1	cis	parietal	SCAN
rs362632	AZGP1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103206000-103243400	Weak transcription	K562	blood
2	chr7:103230400-103246200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103232600-103234600	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links