Variant report

Variant	rs10487167
Chromosome Location	chr7:103375437-103375438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103374430..103376979-chr7:103378353..103381015,4	K562	blood:
2	chr7:103373703..103377683-chr7:103378422..103380704,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12533612	0.87[AMR][1000 genomes]
rs12539423	0.87[AMR][1000 genomes]
rs17153784	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs17153873	0.82[CEU][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs17154011	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs17154172	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs17154414	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17155063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155341	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2072402	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs2072403	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs2072404	0.82[CEU][hapmap];0.82[CHB][hapmap];0.84[MEX][hapmap]
rs2073552	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs2073553	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs2073554	0.87[AMR][1000 genomes]
rs2075042	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs2237634	1.00[CEU][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes]
rs2299351	0.87[AMR][1000 genomes]
rs2299352	0.87[AMR][1000 genomes]
rs3025970	0.82[CEU][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs34196791	0.87[AMR][1000 genomes]
rs362685	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs362704	0.87[AMR][1000 genomes]
rs3757737	0.82[CEU][hapmap]
rs3757739	0.87[AMR][1000 genomes]
rs3757740	0.87[AMR][1000 genomes]
rs3757741	0.87[AMR][1000 genomes]
rs3808022	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs3808023	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs3808025	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs3808028	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs3819466	1.00[CEU][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7805831	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518040	chr7:103375437-103379897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv524344	chr7:103375437-103379897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103374600-103376600	Enhancers	HUVEC	blood vessel
2	chr7:103375000-103376600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:103375000-103376800	Enhancers	Hela-S3	cervix
4	chr7:103375200-103391000	Weak transcription	HepG2	liver

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