Variant report

Variant	rs3757737
Chromosome Location	chr7:103320164-103320165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103319857..103322133-chr7:103324441..103326185,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10269791	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10487167	0.82[CEU][hapmap]
rs11979780	0.91[YRI][hapmap];0.91[AFR][1000 genomes]
rs12533612	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12539423	1.00[EUR][1000 genomes]
rs1541328	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17153784	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17153873	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17154011	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17154172	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17154414	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17155063	0.82[CEU][hapmap]
rs17155341	0.82[CEU][hapmap]
rs2072402	1.00[CEU][hapmap]
rs2072403	1.00[CEU][hapmap]
rs2072404	1.00[CEU][hapmap]
rs2073552	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2073553	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2073554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2075042	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2237634	0.82[CEU][hapmap]
rs2299351	1.00[EUR][1000 genomes]
rs2299352	1.00[EUR][1000 genomes]
rs2299362	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs28695350	0.89[AFR][1000 genomes]
rs28784650	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3025970	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs34196791	1.00[EUR][1000 genomes]
rs362685	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs362704	1.00[EUR][1000 genomes]
rs3757739	1.00[EUR][1000 genomes]
rs3757740	1.00[EUR][1000 genomes]
rs3757741	1.00[EUR][1000 genomes]
rs3808022	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3808023	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3808025	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3808028	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3819466	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933167	chr7:103312181-103322483	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103319200-103321400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:103319200-103321400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:103319400-103321800	Enhancers	Osteobl	bone
4	chr7:103319600-103320600	Enhancers	Brain Germinal Matrix	brain
5	chr7:103319600-103323200	Enhancers	Hela-S3	cervix
6	chr7:103319800-103320400	Enhancers	Brain Cingulate Gyrus	brain
7	chr7:103319800-103321400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:103319800-103321400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:103319800-103321600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:103319800-103322200	Enhancers	HepG2	liver
11	chr7:103320000-103321000	Enhancers	Muscle Satellite Cultured Cells	--

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