Variant report

Variant	rs3757739
Chromosome Location	chr7:103301451-103301452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103299093..103302989-chr7:103306962..103309461,4	K562	blood:
2	chr7:103297074..103301566-chr7:103303216..103306956,8	K562	blood:
3	chr7:103297558..103299544-chr7:103301065..103303822,2	K562	blood:
4	chr7:103299107..103301619-chr7:103313448..103316125,2	K562	blood:
5	chr7:103298022..103299710-chr7:103300574..103302831,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10487167	0.87[AMR][1000 genomes]
rs12533612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12539423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541328	1.00[EUR][1000 genomes]
rs17153784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17153873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17154172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154414	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17155063	0.87[AMR][1000 genomes]
rs2072402	0.97[ASN][1000 genomes]
rs2072403	0.97[ASN][1000 genomes]
rs2072404	0.97[ASN][1000 genomes]
rs2073552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2075042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2215536	1.00[ASN][1000 genomes]
rs2240964	0.97[ASN][1000 genomes]
rs2299339	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2299351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2299352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28784650	1.00[EUR][1000 genomes]
rs3025970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34196791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs362662	0.91[AMR][1000 genomes]
rs362685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs362704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3757737	1.00[EUR][1000 genomes]
rs3757740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3808025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3808028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103298200-103305000	Enhancers	HepG2	liver
2	chr7:103300600-103303200	Enhancers	Hela-S3	cervix
3	chr7:103300800-103301600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:103300800-103301600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:103300800-103301600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:103300800-103301600	Enhancers	Fetal Intestine Small	intestine
7	chr7:103300800-103301600	Enhancers	HSMM	muscle
8	chr7:103300800-103301600	Enhancers	NH-A	brain
9	chr7:103300800-103301600	Enhancers	NHDF-Ad	bronchial
10	chr7:103300800-103301600	Enhancers	NHLF	lung
11	chr7:103300800-103301800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:103300800-103301800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:103300800-103301800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:103300800-103301800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:103300800-103301800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:103300800-103301800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:103300800-103301800	Enhancers	HUVEC	blood vessel
18	chr7:103300800-103302000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:103300800-103302000	Enhancers	A549	lung
20	chr7:103300800-103302000	Enhancers	HMEC	breast
21	chr7:103300800-103302000	Genic enhancers	K562	blood
22	chr7:103301000-103301600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:103301000-103301600	Enhancers	NHEK	skin
24	chr7:103301000-103301800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr7:103301000-103301800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:103301000-103301800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:103301000-103302000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:103301400-103302000	Enhancers	Placenta	Placenta

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