Variant report

Variant	rs10487394
Chromosome Location	chr7:117885038-117885039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117874784..117876753-chr7:117884123..117886135,2	K562	blood:
2	chr7:117884617..117887581-chr7:117888612..117890526,2	MCF-7	breast:
3	chr7:117884069..117886965-chr7:117888003..117890494,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10487389	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10487391	1.00[CEU][hapmap]
rs10487393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1468283	0.82[EUR][1000 genomes]
rs16870200	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16873472	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17140886	0.85[ASN][1000 genomes]
rs17140956	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17140962	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17140972	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141043	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141056	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141125	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141146	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141165	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141173	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141175	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141184	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141188	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141201	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141207	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17141209	0.82[EUR][1000 genomes]
rs17141223	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141225	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17141228	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141230	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141232	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17141240	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141242	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141249	0.82[ASN][1000 genomes]
rs2041529	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2041530	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2057684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058419	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2109858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34551547	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3757798	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3944132	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4526305	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4727860	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4727863	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4727864	0.85[ASN][1000 genomes]
rs4730841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730842	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730843	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730844	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730845	0.90[ASN][1000 genomes]
rs4730846	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730847	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55759859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978482	0.82[EUR][1000 genomes]
rs7786481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv889089	chr7:117865940-117921267	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117884800-117886400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:117885000-117885400	Enhancers	GM12878-XiMat	blood
3	chr7:117885000-117885600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:117885000-117885600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:117885000-117886200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:117885000-117886200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links