Variant report

Variant	rs17141188
Chromosome Location	chr7:117917916-117917917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117916864..117919001-chr7:117920265..117922583,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10487389	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10487393	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10487394	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10487395	0.90[ASN][1000 genomes]
rs16870200	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16873472	0.87[AFR][1000 genomes]
rs17140956	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17140962	0.84[AMR][1000 genomes]
rs17140972	0.89[AMR][1000 genomes]
rs17141043	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17141056	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17141102	0.90[ASN][1000 genomes]
rs17141104	0.90[ASN][1000 genomes]
rs17141125	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17141126	0.90[ASN][1000 genomes]
rs17141127	0.90[ASN][1000 genomes]
rs17141146	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141150	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141165	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141173	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141209	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141223	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141228	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141230	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17141240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141242	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141249	0.92[ASN][1000 genomes]
rs2041529	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2041530	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2057684	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2057685	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2109858	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34551547	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3757797	0.87[ASN][1000 genomes]
rs3757798	0.90[ASN][1000 genomes]
rs3944132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727860	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4727863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4727864	0.95[ASN][1000 genomes]
rs4730841	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730847	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55759859	0.90[ASN][1000 genomes]
rs6961495	0.90[ASN][1000 genomes]
rs6972068	0.90[ASN][1000 genomes]
rs7786481	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889089	chr7:117865940-117921267	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117915200-117920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:117917200-117919600	Weak transcription	Dnd41	blood

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