Variant report

Variant	rs4730847
Chromosome Location	chr7:117926864-117926865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117926569..117928366-chr7:117931162..117932666,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10229271	0.81[EUR][1000 genomes]
rs10487393	0.85[ASN][1000 genomes]
rs10487394	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10487395	0.85[ASN][1000 genomes]
rs16870200	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140792	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17140797	0.81[EUR][1000 genomes]
rs17140886	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17141102	0.85[ASN][1000 genomes]
rs17141104	0.85[ASN][1000 genomes]
rs17141125	0.85[ASN][1000 genomes]
rs17141126	0.85[ASN][1000 genomes]
rs17141127	0.85[ASN][1000 genomes]
rs17141146	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141150	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141165	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141173	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141175	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141184	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141188	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141201	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141207	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17141209	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17141223	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141225	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141228	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141230	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141232	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17141240	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141242	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141249	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2057684	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2057685	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2109858	0.85[ASN][1000 genomes]
rs2402299	0.81[EUR][1000 genomes]
rs34551547	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757797	0.82[ASN][1000 genomes]
rs3757798	0.85[ASN][1000 genomes]
rs3944132	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4526305	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4727863	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727864	1.00[ASN][1000 genomes]
rs4730841	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730842	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730843	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730844	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730845	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4730846	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55759859	0.85[ASN][1000 genomes]
rs6961495	0.85[ASN][1000 genomes]
rs6972068	0.85[ASN][1000 genomes]
rs7786481	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv518701	chr7:117921267-117928764	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117926000-117927200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:117926200-117927000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
3	chr7:117926400-117927200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
4	chr7:117926600-117927000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr7:117926600-117927000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr7:117926600-117927000	Flanking Active TSS	Dnd41	blood
7	chr7:117926600-117929000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:117926800-117927000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr7:117926800-117927600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
10	chr7:117926800-117928600	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links