Variant report

Variant	rs10488911
Chromosome Location	chr4:95831744-95831745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17022414	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022426	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17022464	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022481	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022515	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022683	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17022725	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs56248936	1.00[AMR][1000 genomes]
rs56712127	1.00[AMR][1000 genomes]
rs57249444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57879004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60363817	1.00[AMR][1000 genomes]
rs60592097	1.00[AMR][1000 genomes]
rs60793962	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61505577	1.00[AMR][1000 genomes]
rs72887841	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887869	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887893	0.90[AFR][1000 genomes]
rs72887899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889508	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889509	1.00[AMR][1000 genomes]
rs72889552	1.00[AMR][1000 genomes]
rs72889572	1.00[AMR][1000 genomes]
rs73836156	1.00[AMR][1000 genomes]
rs73836161	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836199	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95811000-95833600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:95816800-95845800	Weak transcription	A549	lung
3	chr4:95830000-95833000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:95831000-95837600	Weak transcription	Fetal Kidney	kidney
5	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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