Variant report

Variant	rs72889572
Chromosome Location	chr4:95895709-95895710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95894975..95897109-chr4:95919263..95921019,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10488911	1.00[AMR][1000 genomes]
rs17022414	1.00[AMR][1000 genomes]
rs17022426	1.00[AMR][1000 genomes]
rs17022464	1.00[AMR][1000 genomes]
rs17022481	1.00[AMR][1000 genomes]
rs17022515	1.00[AMR][1000 genomes]
rs17022683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56248936	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56712127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57249444	1.00[AMR][1000 genomes]
rs57879004	1.00[AMR][1000 genomes]
rs60363817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60592097	1.00[AMR][1000 genomes]
rs60793962	1.00[AMR][1000 genomes]
rs61505577	1.00[AMR][1000 genomes]
rs72887841	1.00[AMR][1000 genomes]
rs72887869	1.00[AMR][1000 genomes]
rs72887884	1.00[AMR][1000 genomes]
rs72887899	1.00[AMR][1000 genomes]
rs72889508	1.00[AMR][1000 genomes]
rs72889509	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836156	1.00[AMR][1000 genomes]
rs73836161	1.00[AMR][1000 genomes]
rs73836199	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95894000-95896400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95894200-95904800	Weak transcription	Aorta	Aorta
3	chr4:95895000-95896000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:95895000-95896200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:95895400-95895800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:95895600-95895800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:95895600-95895800	Flanking Active TSS	A549	lung
8	chr4:95895600-95896000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:95895600-95896200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:95895600-95896400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:95895600-95896400	Enhancers	HSMM	muscle
12	chr4:95895600-95896400	Enhancers	HSMMtube	muscle
13	chr4:95895600-95896400	Enhancers	NHDF-Ad	bronchial
14	chr4:95895600-95896600	Enhancers	NH-A	brain

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