Variant report

Variant	rs61505577
Chromosome Location	chr4:95789665-95789666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95788237..95790054-chr4:95797939..95799510,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10488911	1.00[AMR][1000 genomes]
rs16996449	0.81[AFR][1000 genomes]
rs17022414	1.00[AMR][1000 genomes]
rs17022426	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022446	0.81[AFR][1000 genomes]
rs17022464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022515	1.00[AMR][1000 genomes]
rs17022683	1.00[AMR][1000 genomes]
rs17022725	1.00[AMR][1000 genomes]
rs56248936	1.00[AMR][1000 genomes]
rs56712127	1.00[AMR][1000 genomes]
rs57249444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57879004	1.00[AMR][1000 genomes]
rs60363817	1.00[AMR][1000 genomes]
rs60592097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60793962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887841	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887871	0.82[AFR][1000 genomes]
rs72887873	0.81[AFR][1000 genomes]
rs72887884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887893	0.84[AFR][1000 genomes]
rs72887899	1.00[AMR][1000 genomes]
rs72889508	1.00[AMR][1000 genomes]
rs72889509	1.00[AMR][1000 genomes]
rs72889552	1.00[AMR][1000 genomes]
rs72889572	1.00[AMR][1000 genomes]
rs73836156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836199	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95791400	Weak transcription	A549	lung
2	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
3	chr4:95789600-95789800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:95789600-95790000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:95789600-95792000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95789600-95792000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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