Variant report

Variant	rs72887871
Chromosome Location	chr4:95799253-95799254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95788237..95790054-chr4:95797939..95799510,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16996449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022370	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022374	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022389	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022393	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022395	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022396	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022400	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022418	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022464	0.84[AFR][1000 genomes]
rs17022481	0.81[AFR][1000 genomes]
rs17022555	1.00[AMR][1000 genomes]
rs17022558	1.00[AMR][1000 genomes]
rs28405178	1.00[AMR][1000 genomes]
rs56051597	1.00[AMR][1000 genomes]
rs56115063	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56294302	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56722132	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58043492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59304180	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60447645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60592097	0.81[AFR][1000 genomes]
rs60667124	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60793962	0.84[AFR][1000 genomes]
rs61211063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61505577	0.82[AFR][1000 genomes]
rs72887852	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887863	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887865	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887896	1.00[AMR][1000 genomes]
rs73836156	0.82[AFR][1000 genomes]
rs73836161	0.84[AFR][1000 genomes]
rs9968485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
2	chr4:95793400-95801600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:95793400-95802200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:95793400-95810600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:95797200-95800000	Enhancers	A549	lung
6	chr4:95798400-95799800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:95798600-95800000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:95798800-95799400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:95799000-95799400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:95799000-95799800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:95799000-95799800	Enhancers	NHDF-Ad	bronchial
12	chr4:95799000-95800000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:95799000-95800000	Enhancers	HMEC	breast

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