Variant report

Variant	rs17022396
Chromosome Location	chr4:95791008-95791009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16996449	0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022370	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022374	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022388	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022389	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022393	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022395	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022400	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022418	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022446	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022555	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17022558	1.00[AMR][1000 genomes]
rs28405178	1.00[AMR][1000 genomes]
rs56051597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56294302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56722132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58043492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59304180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60447645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60667124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61211063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887871	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887885	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887886	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887896	1.00[AMR][1000 genomes]
rs9968485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95791400	Weak transcription	A549	lung
2	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
3	chr4:95789600-95792000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:95789600-95792000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:95790200-95793000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:95790600-95791400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:95791000-95791200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:95791000-95792000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:95791000-95792200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links