Variant report

Variant	rs17022393
Chromosome Location	chr4:95788331-95788332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95788237..95790054-chr4:95797939..95799510,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16996449	0.90[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022370	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022374	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022388	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022389	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022395	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022396	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022400	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022418	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022426	0.84[LWK][hapmap]
rs17022443	1.00[GIH][hapmap]
rs17022446	0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022555	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17022558	1.00[AMR][1000 genomes]
rs28405178	1.00[AMR][1000 genomes]
rs56051597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115063	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56294302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56722132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58043492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59304180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60447645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60667124	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61211063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887871	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887873	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887885	1.00[AMR][1000 genomes]
rs72887886	1.00[AMR][1000 genomes]
rs72887896	1.00[AMR][1000 genomes]
rs9968485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95768800-95789600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95769000-95789600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95781200-95791400	Weak transcription	A549	lung
4	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney

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