Variant report

Variant	rs10489712
Chromosome Location	chr1:185647192-185647193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185625665..185628117-chr1:185644913..185647516,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489705	0.87[ASN][1000 genomes]
rs10489707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10489711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080798	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081870	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1961519	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59414526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656530	1.00[JPT][hapmap]
rs73061167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070908	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74133230	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7529259	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185635400-185648200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:185637200-185649200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:185639600-185648600	Weak transcription	Left Ventricle	heart
4	chr1:185639600-185649200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:185640000-185648600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:185642600-185648400	Weak transcription	Right Atrium	heart
7	chr1:185643200-185648600	Weak transcription	Fetal Thymus	thymus
8	chr1:185643200-185649400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:185643800-185649200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:185644000-185649200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:185644000-185649200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:185644000-185649600	Weak transcription	Fetal Heart	heart
13	chr1:185644200-185648200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:185644400-185649200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:185644600-185648800	Weak transcription	Primary B cells from cord blood	blood
16	chr1:185644800-185648400	Weak transcription	HUVEC	blood vessel
17	chr1:185644800-185649400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:185645000-185648400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:185645000-185649200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr1:185645000-185649200	Weak transcription	Adipose Nuclei	Adipose
21	chr1:185645200-185648600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:185646200-185647200	Enhancers	Primary T cells from cord blood	blood
23	chr1:185646200-185647200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr1:185646200-185647400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr1:185646200-185647400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:185646200-185647400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:185646200-185647400	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr1:185646200-185647600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:185646200-185647800	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr1:185646400-185647400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr1:185646400-185647400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:185646800-185647200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr1:185646800-185647400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr1:185647000-185649400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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