Variant report

Variant	rs10489705
Chromosome Location	chr1:185593439-185593440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10489706	1.00[CEU][hapmap]
rs10489707	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10489711	0.87[ASN][1000 genomes]
rs10489712	0.87[ASN][1000 genomes]
rs11583193	0.83[YRI][hapmap]
rs12062862	1.00[CEU][hapmap]
rs12080798	0.87[ASN][1000 genomes]
rs12081870	0.87[ASN][1000 genomes]
rs12096560	1.00[CEU][hapmap]
rs16824344	0.87[ASN][1000 genomes]
rs16824352	0.87[ASN][1000 genomes]
rs1961519	0.87[ASN][1000 genomes]
rs59414526	0.87[ASN][1000 genomes]
rs6656530	1.00[JPT][hapmap]
rs73061167	0.87[ASN][1000 genomes]
rs7529259	0.87[ASN][1000 genomes]
rs960690	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3350575	chr1:185580344-185614213	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185588400-185601400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185593200-185594600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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