Variant report

Variant	rs12062862
Chromosome Location	chr1:185622715-185622716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489706	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12067056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096560	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1321991	0.96[ASN][1000 genomes]
rs1321992	0.95[ASN][1000 genomes]
rs16824325	0.93[ASN][1000 genomes]
rs16824329	0.93[ASN][1000 genomes]
rs16824334	0.96[ASN][1000 genomes]
rs59277359	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61449902	0.81[ASN][1000 genomes]
rs73061130	0.99[ASN][1000 genomes]
rs74133224	0.99[ASN][1000 genomes]
rs7535227	0.80[ASN][1000 genomes]
rs960690	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185620000-185623000	Weak transcription	Pancreas	Pancrea
3	chr1:185620000-185623200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:185620000-185624200	Weak transcription	Psoas Muscle	Psoas
5	chr1:185620000-185632200	Weak transcription	HepG2	liver
6	chr1:185620400-185623000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:185622400-185623800	Enhancers	Placenta	Placenta
8	chr1:185622600-185623000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:185622600-185623000	Active TSS	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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