Variant report

Variant	rs7535227
Chromosome Location	chr1:185608364-185608365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10489706	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1073471	0.83[ASN][1000 genomes]
rs10798023	0.81[ASN][1000 genomes]
rs10911759	0.82[ASN][1000 genomes]
rs10911769	0.83[ASN][1000 genomes]
rs10911770	0.88[ASN][1000 genomes]
rs11484606	0.85[ASN][1000 genomes]
rs12062862	0.80[ASN][1000 genomes]
rs12067056	0.80[ASN][1000 genomes]
rs12071422	0.82[ASN][1000 genomes]
rs12073090	0.88[ASN][1000 genomes]
rs12077602	0.87[ASN][1000 genomes]
rs12089482	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12096560	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12096674	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12407672	0.84[ASN][1000 genomes]
rs12565364	0.83[ASN][1000 genomes]
rs12567356	0.83[ASN][1000 genomes]
rs12567373	0.88[ASN][1000 genomes]
rs1407273	0.87[ASN][1000 genomes]
rs1830593	0.83[ASN][1000 genomes]
rs2224512	0.87[ASN][1000 genomes]
rs4565664	0.88[ASN][1000 genomes]
rs4650683	0.81[ASN][1000 genomes]
rs4650684	0.87[ASN][1000 genomes]
rs4651276	0.87[ASN][1000 genomes]
rs4651278	0.88[ASN][1000 genomes]
rs4651279	0.82[ASN][1000 genomes]
rs4651280	0.82[ASN][1000 genomes]
rs59277359	0.80[ASN][1000 genomes]
rs6661437	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6665534	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73062745	0.88[ASN][1000 genomes]
rs73062749	0.83[ASN][1000 genomes]
rs73062758	0.88[ASN][1000 genomes]
rs73062759	0.88[ASN][1000 genomes]
rs73062761	0.83[ASN][1000 genomes]
rs7416006	0.88[ASN][1000 genomes]
rs960690	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3350575	chr1:185580344-185614213	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185606600-185613200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185606800-185613200	Weak transcription	NHEK	skin
3	chr1:185607600-185618000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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