Variant report

Variant	rs12077602
Chromosome Location	chr1:185574969-185574970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10489706	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs1073471	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10798023	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10911759	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10911762	0.85[ASN][1000 genomes]
rs10911764	0.85[ASN][1000 genomes]
rs10911766	0.85[ASN][1000 genomes]
rs10911769	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10911770	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11484606	0.81[ASN][1000 genomes]
rs12062862	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap]
rs12071422	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12073090	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12075447	0.85[ASN][1000 genomes]
rs12081447	0.85[ASN][1000 genomes]
rs12089482	0.96[ASN][1000 genomes]
rs12096560	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs12096674	0.86[ASN][1000 genomes]
rs12407672	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12565364	0.93[ASN][1000 genomes]
rs12567356	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12567373	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1407273	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830593	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2224512	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4565664	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4650683	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4650684	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651276	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651278	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4651279	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4651280	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58210626	0.85[ASN][1000 genomes]
rs59587435	0.80[ASN][1000 genomes]
rs6661437	0.96[ASN][1000 genomes]
rs6665534	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696493	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73062745	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73062749	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73062758	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73062759	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73062761	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7416006	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7535227	0.87[ASN][1000 genomes]
rs960690	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185569800-185575200	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:185573600-185576400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:185574600-185575000	Enhancers	Fetal Heart	heart

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