Variant report

Variant	rs10798023
Chromosome Location	chr1:185579181-185579182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10489706	0.89[ASN][1000 genomes]
rs1073470	0.84[ASN][1000 genomes]
rs1073471	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798022	0.84[ASN][1000 genomes]
rs10911759	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911767	0.82[ASN][1000 genomes]
rs10911768	0.84[ASN][1000 genomes]
rs10911769	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911770	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12071422	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12073090	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12077602	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12078333	0.84[ASN][1000 genomes]
rs12081525	0.85[ASN][1000 genomes]
rs12083029	0.84[ASN][1000 genomes]
rs12089482	0.89[ASN][1000 genomes]
rs12096560	0.89[ASN][1000 genomes]
rs12402733	0.81[ASN][1000 genomes]
rs12407672	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12565364	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12567356	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12567373	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1407273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1830592	0.84[ASN][1000 genomes]
rs1830593	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2224512	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4565664	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4650683	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4650684	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4651276	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4651278	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4651279	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651280	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57929036	0.84[ASN][1000 genomes]
rs59587435	0.83[ASN][1000 genomes]
rs59739768	0.84[ASN][1000 genomes]
rs59772563	0.84[ASN][1000 genomes]
rs60007510	0.84[ASN][1000 genomes]
rs6661437	0.89[ASN][1000 genomes]
rs6665534	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6696493	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73062745	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73062748	0.84[ASN][1000 genomes]
rs73062749	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73062758	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73062759	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73062761	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73062767	0.84[ASN][1000 genomes]
rs7416006	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7535227	0.81[ASN][1000 genomes]
rs960690	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185576000-185579400	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:185578800-185579200	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links