Variant report

Variant	rs59277359
Chromosome Location	chr1:185619753-185619754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12062862	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067056	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321991	0.96[ASN][1000 genomes]
rs1321992	0.95[ASN][1000 genomes]
rs16824325	0.93[ASN][1000 genomes]
rs16824329	0.93[ASN][1000 genomes]
rs16824334	0.96[ASN][1000 genomes]
rs61449902	0.81[ASN][1000 genomes]
rs73061130	0.99[ASN][1000 genomes]
rs74133224	0.99[ASN][1000 genomes]
rs7535227	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185616000-185620000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:185616200-185619800	Weak transcription	Psoas Muscle	Psoas
3	chr1:185616600-185620600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:185617200-185619800	Weak transcription	HMEC	breast
5	chr1:185617200-185620200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr1:185618800-185620000	Enhancers	HepG2	liver
7	chr1:185618800-185620400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:185619200-185620000	Enhancers	Placenta	Placenta
10	chr1:185619200-185620400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:185619400-185620400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:185619400-185620400	Enhancers	Fetal Intestine Small	intestine
13	chr1:185619600-185620000	Enhancers	Pancreas	Pancrea
14	chr1:185619600-185620000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:185619600-185620400	Enhancers	Fetal Intestine Large	intestine
16	chr1:185619600-185620400	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr1:185619600-185620400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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