Variant report

Variant	rs1321991
Chromosome Location	chr1:185625971-185625972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12062862	0.95[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs12067056	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1321992	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16824325	0.91[ASN][1000 genomes]
rs16824329	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16824334	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59277359	0.96[ASN][1000 genomes]
rs73061130	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74133224	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185620000-185632200	Weak transcription	HepG2	liver
3	chr1:185624400-185626000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:185625200-185630800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:185625600-185626000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:185625600-185626200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:185625600-185626200	Enhancers	Placenta	Placenta
8	chr1:185625600-185626800	Weak transcription	Fetal Heart	heart
9	chr1:185625800-185626000	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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