Variant report

Variant	rs12081870
Chromosome Location	chr1:185637924-185637925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185636831..185638870-chr1:185648065..185649959,2	K562	blood:
2	chr1:185637732..185641780-chr1:185642049..185644767,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10489705	0.87[ASN][1000 genomes]
rs10489707	1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489711	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489712	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080798	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824344	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824352	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1961519	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59414526	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656530	1.00[JPT][hapmap]
rs73061167	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070908	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7529259	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185632800-185639200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:185632800-185639400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:185632800-185641800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:185632800-185643400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:185632800-185646200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:185633200-185639200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:185635400-185639400	Weak transcription	Gastric	stomach
9	chr1:185635400-185648200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:185636200-185639200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:185636200-185639200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:185636600-185638200	Enhancers	Fetal Heart	heart
13	chr1:185636600-185639400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:185636800-185639200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:185637200-185638200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr1:185637200-185649200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:185637400-185638000	Weak transcription	Primary T cells from cord blood	blood
18	chr1:185637400-185638800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:185637400-185638800	Weak transcription	Left Ventricle	heart
20	chr1:185637400-185643400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:185637600-185639200	Weak transcription	Stomach Mucosa	stomach
22	chr1:185637600-185639400	Weak transcription	Right Ventricle	heart

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